X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sphinx%2Fderivatives.rst;h=8b9084584a1bc7869a80afcde8cbfa2cf47902aa;hb=b55324a6ebb68967ec6c884b93df01143c91f2b8;hp=588dc76f4eebedd9a28e0ec2ef86162be9a5a08d;hpb=bdcb0c4afe1ef63d94ac38a6d204cb58fe6e7e4f;p=neurodebian.git diff --git a/sphinx/derivatives.rst b/sphinx/derivatives.rst index 588dc76..8b90845 100644 --- a/sphinx/derivatives.rst +++ b/sphinx/derivatives.rst @@ -7,16 +7,20 @@ NeuroDebian "Derivatives" ************************* +.. replace with icons eventually + +`Hybrid Live Media`_ | `Live CD/USB Media`_ | `Virtual Appliances`_ | `Cloud Solutions`_ + NeuroDebian_ is not a *Linux distribution* in a traditional sense because we -work within Debian_ project thus not providing our custom installer etc. But -we are a Linux-distribution providing a repository of up-to-date builds and -maintaining a :ref:`chap_vm` deployment of Debian. Because of the openness -and modularity of Debian other enthusiasts develop customized derivative -solutions based to address a particular demand. +are working within Debian_ project thus not providing our custom installer +etc. But we are a Linux-distribution providing a repository of up-to-date +builds and maintaining a :ref:`chap_vm` deployment of Debian. Because of the +openness and modularity of Debian other enthusiasts develop customized +derivative solutions to address their particular needs. -This page presents such *derivative* projects which are tuned for particular -domains of application in neuroscience and rely on NeuroDebian_ as the origin -for necessary tools. +This page presents some of such *derivative* projects which are tuned for +particular domains of application in neuroscience and rely on NeuroDebian_ as +the origin of necessary tools. .. note:: @@ -24,6 +28,32 @@ for necessary tools. you support inquiries to respective authors/maintainers. +Hybrid Live Media +================= + +NEST Live Media +--------------- + ++---------------------------+----------------------------------------------------------------+ +|**Author** | Yury V. Zaytsev | ++---------------------------+----------------------------------------------------------------+ +|**Homepage** | http://www.nest-initiative.org/index.php/Software:Download | ++---------------------------+----------------------------------------------------------------+ +|**Purpose** | Demonstration live media for conferences and students | ++---------------------------+----------------------------------------------------------------+ +|**Features** | - Based on Ubuntu 12.04 LTS (i386 only) | +| | - ISO for DVDs and sticks, OVA for VirtualBox | ++---------------------------+----------------------------------------------------------------+ +|**Pre-installed Software** | NeuroDebian | +| | PyNN, Brian | +| | Custom: | +| | NEST, NEURON | ++---------------------------+----------------------------------------------------------------+ +|**Download** | http://www.nest-initiative.org/download/gplreleases/ [~1.5G] | ++---------------------------+----------------------------------------------------------------+ +|**References** | https://github.com/nest/livecd-scripts | ++---------------------------+----------------------------------------------------------------+ + Live CD/USB Media ================= @@ -31,48 +61,98 @@ USB Stick for Computational Neuroscience by Cengiz Günay -------------------------------------------------------- +---------------------------+-------------------------------------------------------+ -|**Author** |Cengiz Günay | +|**Author** | Cengiz Günay | +---------------------------+-------------------------------------------------------+ -|**Homepage** | N/A | +|**Homepage** | TBA | +---------------------------+-------------------------------------------------------+ |**Purpose** | Computational neuroscience tools for course-work | +---------------------------+-------------------------------------------------------+ |**Features** | - Persistent Storage | -| | - XXX | +| | - Based on Ubuntu_ 11.04 | +---------------------------+-------------------------------------------------------+ |**Pre-installed Software** | NeuroDebian | -| | Brian (XXX?), XXX | +| | XPPAUT_ 6.11b, python-brian_ | | | Custom: | -| | Genesis, Neuron, XPPAUT | +| | Genesis_ 2.3, Neuron_ 7.2, XPPAUT_ 6.10 | +---------------------------+-------------------------------------------------------+ -|**Download** | http://neuro.debian.net/debian/live/3rd/XXX.iso [2GB] | +|**Download** | TBA | +---------------------------+-------------------------------------------------------+ -|**References** | XXX point to the blog entry whenever is ready | +|**References** | TBA | +---------------------------+-------------------------------------------------------+ Lin4Neuro --------- ++---------------------------+-------------------------------------------------------+ +|**Author** | Kiyotaka Nemoto | ++---------------------------+-------------------------------------------------------+ +|**Homepage** | http://www.nemotos.net/lin4neuro/ | ++---------------------------+-------------------------------------------------------+ +|**Purpose** | Neuroimaging tools for course-work | ++---------------------------+-------------------------------------------------------+ +|**Features** | - Datasets and tutorials from C.Rorden (mricron_) | +| | - Both 32- and 64-bit images | +| | - Based on Ubuntu_ 10.04 LTS and Xubuntu_ 12.04 LTS | ++---------------------------+-------------------------------------------------------+ +|**Pre-installed Software** | NeuroDebian | +| | AFNI_, AMIDE, Caret_, FSL_, LIPSIA_, mricron_, etc. | +| | Custom: | +| | 3DSlicer, Ginkgo CADx, MINC, MRIConvert, Virtual MRI | ++---------------------------+-------------------------------------------------------+ +|**Download** | http://www.nemotos.net/l4n-iso/ [~2GB] | ++---------------------------+-------------------------------------------------------+ +|**References** | http://www.biomedcentral.com/1471-2342/11/3 | ++---------------------------+-------------------------------------------------------+ + Virtual Appliances ================== -* XNAT -* MIPAV +XNAT +---- ++---------------------------+-------------------------------------------------------+ +|**Author** | Satrajit Ghosh | ++---------------------------+-------------------------------------------------------+ +|**Homepage** | http://datasharing.incf.org/ni/Install_XNAT | ++---------------------------+-------------------------------------------------------+ +|**Purpose** | XNAT_ deployment | ++---------------------------+-------------------------------------------------------+ +|**Features** | - XNAT_ 1.5 | +| | - 64-bit only | +| | - Based on NeuroDebian VM appliance | ++---------------------------+-------------------------------------------------------+ +|**Pre-installed Software** | Custom: | +| | XNAT_ | ++---------------------------+-------------------------------------------------------+ +|**Download** | `XNAT 1.5.0 NeuroDebian VM `_ | ++---------------------------+-------------------------------------------------------+ -Cloud Environments -================== +.. _xnat_vm_image: http://neuro.debian.net/_files/contrib/NeuroDebian_6.0.2+XNAT1.5.0-1_amd64.ova + + +JIST Development Virtual Machine +-------------------------------- + +http://www.nitrc.org/projects/jist + + +Cloud Solutions +=============== + +NeuroCloud +---------- + +http://gow.epsrc.ac.uk/NGBOViewGrant.aspx?GrantRef=EP/I016856/1 -* NITRC? +NITRC Computational Environment +------------------------------- +`NITRC-CE @ Amazon Marketplace `_ -Cloud Images -============ +.. * INCF Cloud App? -* UK Grant project -* INCF Cloud App? .. include:: link_names.txt