X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sortseqscommand.h;h=0685d3bad74dde206fce4872fd165186f15df355;hb=731d19a6eaf81768ed35e4be25fbac5686a2a7a0;hp=b8078555385fe9f7d454366517c19d96238242f2;hpb=6f6cc4061459b264b0933111d90674ad7e4b0ecb;p=mothur.git

diff --git a/sortseqscommand.h b/sortseqscommand.h
index b807855..0685d3b 100644
--- a/sortseqscommand.h
+++ b/sortseqscommand.h
@@ -27,7 +27,7 @@ public:
     string getCommandCategory()		{ return "Sequence Processing";		}
     string getHelpString();	
     string getCitation() { return "http://www.mothur.org/wiki/Sort.seqs"; }
-    string getDescription()		{ return "puts sequences from a fasta, name, group, quality or taxonomy file in the same order"; }
+    string getDescription()		{ return "puts sequences from a fasta, name, group, quality, flow or taxonomy file in the same order"; }
     
     int execute(); 
     void help() { m->mothurOut(getHelpString()); }	
@@ -35,11 +35,12 @@ public:
 	
 private:
     map<string, int> names;
-    string accnosfile, fastafile, namefile, groupfile, taxfile, qualfile, outputDir;
+    string accnosfile, fastafile, namefile, groupfile, taxfile, qualfile, flowfile, outputDir;
     bool abort, large;
     vector<string> outputNames;
     
     int readFasta();
+    int readFlow();
     int readName();
     int readGroup();
     int readAccnos();