X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=slibshuff.h;fp=slibshuff.h;h=8e034f990ed3a23825c802007e99c775257ddf2d;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git

diff --git a/slibshuff.h b/slibshuff.h
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+#ifndef SLIBSHUFF
+#define SLIBSHUFF
+
+/*
+ *  slibshuff.h
+ *  Mothur
+ *
+ *  Created by Pat Schloss on 4/8/09.
+ *  Copyright 2009 Patrick D. Schloss. All rights reserved.
+ *
+ */
+
+#include "fullmatrix.h"
+#include "libshuff.h"
+
+class SLibshuff : public Libshuff {
+
+public:
+	SLibshuff(FullMatrix*, int, float);
+	vector<vector<double> > evaluateAll();
+	float evaluatePair(int, int);
+	
+private:
+	double sCalculate(int, int);
+};
+
+#endif