X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=shhhseqscommand.cpp;h=5c6359ec58bb776ce9a050a132e8409e60cf197b;hb=4418e128575c1d667720090d7b45d9b48de81a3a;hp=f6bfd81974628e9f5246b25237f79c25c4bf320e;hpb=43ed0accfbc2852849e104ff7eccdd2c42acd4ec;p=mothur.git

diff --git a/shhhseqscommand.cpp b/shhhseqscommand.cpp
index f6bfd81..5c6359e 100644
--- a/shhhseqscommand.cpp
+++ b/shhhseqscommand.cpp
@@ -695,14 +695,15 @@ int ShhhSeqsCommand::deconvoluteResults(string fastaFile, string nameFile){
 		string inputString = "fasta=" + fastaFile + ", name=" + nameFile;
 		m->mothurOut("/******************************************/"); m->mothurOutEndLine(); 
 		m->mothurOut("Running command: unique.seqs(" + inputString + ")"); m->mothurOutEndLine(); 
-		
+		m->mothurCalling = true;
+        
 		Command* uniqueCommand = new DeconvoluteCommand(inputString);
 		uniqueCommand->execute();
 		
 		map<string, vector<string> > filenames = uniqueCommand->getOutputFiles();
 		
 		delete uniqueCommand;
-		
+		m->mothurCalling = false;
 		m->mothurOut("/******************************************/"); m->mothurOutEndLine(); 
 		
 		string newnameFile = filenames["name"][0];