X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=shhhercommand.h;fp=shhhercommand.h;h=a95815fd154be1027d79cb33861c733be207ef1d;hb=9c37bed33eaa0bb2d3c499085c0e165c0f00886b;hp=dba4d68917e9027edc8d8888de82b2e6938e9256;hpb=62c36830aae6dd6151898ec6e07df59c8aed79fe;p=mothur.git

diff --git a/shhhercommand.h b/shhhercommand.h
index dba4d68..a95815f 100644
--- a/shhhercommand.h
+++ b/shhhercommand.h
@@ -33,7 +33,7 @@ private:
 	
 	int abort;
 	
-	string outputDir, flowFileName, flowFilesFileName, lookupFileName, compositeFASTAFileName;
+	string outputDir, flowFileName, flowFilesFileName, lookupFileName, compositeFASTAFileName, compositeNamesFileName;
 
 	int processors, maxIters;
 	float cutoff, sigma, minDelta;
@@ -66,7 +66,9 @@ private:
 	vector<int> mapSeqToUnique;
 	vector<int> mapUniqueToSeq;
 	vector<int> uniqueLengths;
-	
+
+	vector<string> outputNames;
+
 	int numSeqs, numUniques, numOTUs, numFlowCells;
 	
 	void getSingleLookUp();