X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=shhhercommand.h;fp=shhhercommand.h;h=9e50824b05f9c70a151a903b8119ba09c447b963;hb=2a99ff8ba22dda9d0c1b125e5c9ff91e23ed6879;hp=650bf8cbe41e30c1307e9b7b180186d7a87c823f;hpb=74d3aaf0f85080ea3cfb1f1871e706bab9f48392;p=mothur.git

diff --git a/shhhercommand.h b/shhhercommand.h
index 650bf8c..9e50824 100644
--- a/shhhercommand.h
+++ b/shhhercommand.h
@@ -33,7 +33,8 @@ private:
 	int abort;
 	map<string, vector<string> > outputTypes;
 	
-	string outputDir, flowFileName, flowFilesFileName, lookupFileName;
+	string outputDir, flowFileName, flowFilesFileName, lookupFileName, compositeFASTAFileName;
+
 	int processors, maxIters;
 	float cutoff, sigma, minDelta;