X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=shhhercommand.h;fp=shhhercommand.h;h=8d29d86e0ec606379e471a363dbe33af34336d8e;hb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;hp=51a5c3cc46fcad5ab70393bc0e153ffe6715b121;hpb=36a867cbd85d9c276d3c8d13f25a150bbbe2466b;p=mothur.git

diff --git a/shhhercommand.h b/shhhercommand.h
index 51a5c3c..8d29d86 100644
--- a/shhhercommand.h
+++ b/shhhercommand.h
@@ -12,26 +12,25 @@
 
 #include "mothur.h"
 #include "command.hpp"
-#include "globaldata.hpp"
+
 
 class ShhherCommand : public Command {
 	
 public:
 	ShhherCommand(string);
 	ShhherCommand();
-	~ShhherCommand();
-	vector<string> getRequiredParameters();
-	vector<string> getValidParameters();
-	vector<string> getRequiredFiles();
-	map<string, vector<string> > getOutputFiles() { return outputTypes; }
-	int execute();
-	void help();
+	~ShhherCommand() {}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "shhh.seqs";	}
+	string getCommandCategory()		{ return "Hidden";		}
+	string getHelpString();	
 	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }		
 private:
-	GlobalData* globaldata;
 	
 	int abort;
-	map<string, vector<string> > outputTypes;
 	
 	string outputDir, flowFileName, flowFilesFileName, lookupFileName, compositeFASTAFileName;