X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=shen.cpp;fp=shen.cpp;h=dac12bd69e83fb635c5b1ab1433a776940332e8e;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git

diff --git a/shen.cpp b/shen.cpp
new file mode 100644
index 0000000..dac12bd
--- /dev/null
+++ b/shen.cpp
@@ -0,0 +1,42 @@
+/*
+ *  shen.cpp
+ *  Mothur
+ *
+ *  Created by Thomas Ryabin on 5/18/09.
+ *  Copyright 2009Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "shen.h"
+#include "ace.h"
+
+	
+/***********************************************************************/	
+EstOutput Shen::getValues(SAbundVector* rank){
+
+	try {
+		
+		data.resize(1,0);
+		
+		double n = (double)rank->getNumSeqs();
+		double f1 = (double)rank->get(1);
+		
+		Ace* calc = new Ace(abund);
+		EstOutput ace = calc->getValues(rank);
+		
+		double f0 = ace[0]-rank->getNumBins();
+		
+		data[0] = f0 * (1 - pow(1 - f1/n/f0, f));
+		
+		delete calc;
+		
+		return data;
+	}
+	catch(exception& e) {
+		m->errorOut(e, "Shen", "getValues");
+		exit(1);
+	}
+}
+
+
+/***********************************************************************/