X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sharedutilities.cpp;h=d9891db7966da9178ce0b0deaa177ddeb192fc79;hb=bd27c2b0612942815b7417c79f7ee41f669a2a34;hp=151b254c7ca983abe1568a962aba5eef0e2f5ead;hpb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;p=mothur.git

diff --git a/sharedutilities.cpp b/sharedutilities.cpp
index 151b254..d9891db 100644
--- a/sharedutilities.cpp
+++ b/sharedutilities.cpp
@@ -22,7 +22,9 @@ void SharedUtil::getSharedVectors(vector<string> Groups, vector<SharedRAbundVect
 		}
 		
 		lookup.clear();
-		
+        
+		sort(Groups.begin(), Groups.end());
+        
 		//create and initialize vector of sharedvectors, one for each group
 		for (int i = 0; i < Groups.size(); i++) { 
 			SharedRAbundVector* temp = new SharedRAbundVector(order->getNumBins());
@@ -120,7 +122,7 @@ void SharedUtil::setGroups(vector<string>& userGroups, vector<string>& allGroups
 				
 				//if the user only entered invalid groups
 				if (userGroups.size() == 0) { 
-					m->mothurOut("You provided no valid groups. I will run the command using all the groups in your groupfile."); m->mothurOutEndLine();
+					m->mothurOut("You provided no valid groups. I will run the command using all the groups in your file."); m->mothurOutEndLine();
 					for (int i = 0; i < allGroups.size(); i++) {
 						userGroups.push_back(allGroups[i]);
 					}