X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sharedsorclass.cpp;h=8f6065096853b358ac75a9fad0355fdb15a47b49;hb=30c1fd8c45b6f0d66c17f2714dbb58b8ddccdce2;hp=4fafe3e8d7b5619a1641b4342355b43b499d8a40;hpb=c537597ec5ebd47b4898da87ae03b0c2aeced354;p=mothur.git

diff --git a/sharedsorclass.cpp b/sharedsorclass.cpp
index 4fafe3e..8f60650 100644
--- a/sharedsorclass.cpp
+++ b/sharedsorclass.cpp
@@ -11,7 +11,7 @@
 
 /***********************************************************************/
 
-EstOutput SorClass::getValues(SharedRAbundVector* shared1, SharedRAbundVector* shared2) {
+EstOutput SorClass::getValues(vector<SharedRAbundVector*> shared) {
 	try {
 		int S1, S2, S12, tempA, tempB;
 		S1 = 0; S2 = 0; S12 = 0; tempA = 0; tempB = 0; 
@@ -21,10 +21,10 @@ EstOutput SorClass::getValues(SharedRAbundVector* shared1, SharedRAbundVector* s
 
 		data.resize(1,0);
 		
-		for (int i = 0; i < shared1->size(); i++) {
+		for (int i = 0; i < shared[0]->size(); i++) {
 			//store in temps to avoid multiple repetitive function calls
-			tempA = shared1->getAbundance(i);
-			tempB = shared2->getAbundance(i);
+			tempA = shared[0]->getAbundance(i);
+			tempB = shared[1]->getAbundance(i);
 
 			//find number of bins in shared1 and shared2
 			if (tempA != 0) { S1++; }
@@ -41,13 +41,9 @@ EstOutput SorClass::getValues(SharedRAbundVector* shared1, SharedRAbundVector* s
 		return data;
 	}
 	catch(exception& e) {
-		cout << "Standard Error: " << e.what() << " has occurred in the SorClass class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+		m->errorOut(e, "SorClass", "getValues");
 		exit(1);
 	}
-	catch(...) {
-		cout << "An unknown error has occurred in the SorClass class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-		exit(1);
-	}	
 }
 
 /***********************************************************************/