X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sharedsorclass.cpp;h=81d8d86b7d295502dc2d75b85cd5accdbc167cdc;hb=485c02be0cdcd06ce08dd58d551a525b6a1b47c5;hp=c9debf7748662b8ebc2464f3d2e70fd7610a72ce;hpb=25cde7ff05bbe741da1712f2c740e0bc8706e523;p=mothur.git

diff --git a/sharedsorclass.cpp b/sharedsorclass.cpp
index c9debf7..81d8d86 100644
--- a/sharedsorclass.cpp
+++ b/sharedsorclass.cpp
@@ -26,8 +26,9 @@ EstOutput SharedSorClass::getValues(SharedRAbundVector* shared1, SharedRAbundVec
 			tempA = shared1->getAbundance(i);
 			tempB = shared2->getAbundance(i);
 
-			S1 += tempA;
-			S2 += tempB;
+			//find number of bins in shared1 and shared2
+			if (tempA != 0) { S1++; }
+			if (tempB != 0) { S2++; } 
 			
 			//they are shared
 			if ((tempA != 0) && (tempB != 0)) {	S12++; }