X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sharedsorclass.cpp;fp=sharedsorclass.cpp;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=85609dad69311e08474a2115755d74761052ab13;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/sharedsorclass.cpp b/sharedsorclass.cpp
deleted file mode 100644
index 85609da..0000000
--- a/sharedsorclass.cpp
+++ /dev/null
@@ -1,49 +0,0 @@
-/*
- *  sharedsorclass.cpp
- *  Dotur
- *
- *  Created by Sarah Westcott on 1/8/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "sharedsorclass.h"
-
-/***********************************************************************/
-
-EstOutput SorClass::getValues(vector<SharedRAbundVector*> shared) {
-	try {
-		double S1, S2, S12, tempA, tempB;
-		S1 = 0; S2 = 0; S12 = 0; tempA = 0; tempB = 0; 
-		
-		/*S1, S2 = number of OTUs observed or estimated in A and B 
-		S12=number of OTUs shared between A and B */
-
-		data.resize(1,0);
-		
-		for (int i = 0; i < shared[0]->getNumBins(); i++) {
-			//store in temps to avoid multiple repetitive function calls
-			tempA = shared[0]->getAbundance(i);
-			tempB = shared[1]->getAbundance(i);
-
-			//find number of bins in shared1 and shared2
-			if (tempA != 0) { S1++; }
-			if (tempB != 0) { S2++; } 
-			
-			//they are shared
-			if ((tempA != 0) && (tempB != 0)) {	S12++; }
-		}
-		
-		data[0] = 1.0-(2 * S12) / (float)(S1 + S2);
-		
-		if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
-		
-		return data;
-	}
-	catch(exception& e) {
-		m->errorOut(e, "SorClass", "getValues");
-		exit(1);
-	}
-}
-
-/***********************************************************************/