X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sharedsorabund.cpp;fp=sharedsorabund.cpp;h=e8953819decf34c6f90efec99da646a7ca38af33;hb=20a2d0350a737a434c89f303662d64a8eeea7b05;hp=0000000000000000000000000000000000000000;hpb=bbb5879a7e566935c23d63d42bb945072424b939;p=mothur.git diff --git a/sharedsorabund.cpp b/sharedsorabund.cpp new file mode 100644 index 0000000..e895381 --- /dev/null +++ b/sharedsorabund.cpp @@ -0,0 +1,40 @@ +/* + * sharedsorabund.cpp + * Dotur + * + * Created by Sarah Westcott on 1/8/09. + * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved. + * + */ + +#include "sharedsorabund.h" + +/***********************************************************************/ + +EstOutput SharedSorAbund::getValues(SharedRAbundVector* shared1, SharedRAbundVector* shared2) { + try { + EstOutput UVest; + UVest.resize(2,0); + data.resize(1,0); + + UVest = uv->getUVest(shared1, shared2); + + //UVest[0] is Uest, UVest[1] is Vest + data[0] = (2 * UVest[0] * UVest[1]) / ((float)(UVest[0] + UVest[1])); + + if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; } + + return data; + } + catch(exception& e) { + cout << "Standard Error: " << e.what() << " has occurred in the SharedSorAbund class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n"; + exit(1); + } + catch(...) { + cout << "An unknown error has occurred in the SharedSorAbund class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n"; + exit(1); + } +} + +/***********************************************************************/ +