X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sharedsorabund.cpp;fp=sharedsorabund.cpp;h=9a1bd63d7bd2a5b459c6b9955afa77cebc23ed7c;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git diff --git a/sharedsorabund.cpp b/sharedsorabund.cpp new file mode 100644 index 0000000..9a1bd63 --- /dev/null +++ b/sharedsorabund.cpp @@ -0,0 +1,37 @@ +/* + * sharedsorabund.cpp + * Dotur + * + * Created by Sarah Westcott on 1/8/09. + * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved. + * + */ + +#include "sharedsorabund.h" + +/***********************************************************************/ + +EstOutput SorAbund::getValues(vector shared) { + try { + EstOutput UVest; + UVest.resize(2,0); + data.resize(1,0); + + UVest = uv->getUVest(shared); + + //UVest[0] is Uest, UVest[1] is Vest + data[0] = (2 * UVest[0] * UVest[1]) / ((float)(UVest[0] + UVest[1])); + + if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; } + data[0] = 1-data[0]; + + return data; + } + catch(exception& e) { + m->errorOut(e, "SorAbund", "getValues"); + exit(1); + } +} + +/***********************************************************************/ +