X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sharedsobscollectsummary.cpp;h=fffed0290b1136da46e42d31c99542da19ec9a0a;hb=b866e1519a60681527244036428104ad1cb90c93;hp=c0cc50700d9f9fc38523991a1c08cf287fb1fc29;hpb=163b300cfd7d4ca4e70c454be20f07b1d8346650;p=mothur.git

diff --git a/sharedsobscollectsummary.cpp b/sharedsobscollectsummary.cpp
index c0cc507..fffed02 100644
--- a/sharedsobscollectsummary.cpp
+++ b/sharedsobscollectsummary.cpp
@@ -16,10 +16,10 @@
 EstOutput SharedSobsCS::getValues(vector<SharedRAbundVector*> shared){
 	try {
 		data.resize(1,0);
-		int observed = 0;
+		double observed = 0;
 		int numGroups = shared.size();
 
-		for (int i = 0; i < shared[0]->size(); i++) {
+		for (int i = 0; i < shared[0]->getNumBins(); i++) {
 			//get bin values and set sharedByAll 
 			bool sharedByAll = true;
 			for (int j = 0; j < numGroups; j++) {
@@ -34,13 +34,9 @@ EstOutput SharedSobsCS::getValues(vector<SharedRAbundVector*> shared){
 		return data;
 	}
 	catch(exception& e) {
-		cout << "Standard Error: " << e.what() << " has occurred in the SharedSobsCS class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+		m->errorOut(e, "SharedSobsCS", "getValues");
 		exit(1);
 	}
-	catch(...) {
-		cout << "An unknown error has occurred in the SharedSobsCS class function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-		exit(1);
-	}	
 }
 
 /***********************************************************************/