X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sharedlistvector.h;fp=sharedlistvector.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=56ea802a1b1bca511454f83ddcb9e8f29bd5ed27;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/sharedlistvector.h b/sharedlistvector.h
deleted file mode 100644
index 56ea802..0000000
--- a/sharedlistvector.h
+++ /dev/null
@@ -1,67 +0,0 @@
-#ifndef SHAREDLIST_H
-#define SHAREDLIST_H
-
-/*
- *  sharedlistvector.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 1/22/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "datavector.hpp"
-#include "groupmap.h"
-#include "sharedrabundvector.h"
-#include "sharedsabundvector.h"
-
-/* This class is a child to datavector.  It represents OTU information at a certain distance. 
-	A sharedlistvector can be converted into a sharedordervector, sharedrabundvector or sharedsabundvectorand 
-	as well as an ordervector, rabundvector or sabundvector.
-	Each member of the internal container "data" represents an individual OTU.
-	Each individual in the OTU belongs to a group.
-	So data[0] = "a,b,c,d,e,f".
-	example: listvector		=	a,b,c,d,e,f		g,h,i		j,k		l		m  
-			 rabundvector	=	6				3			2		1		1
-			 sabundvector	=	2		1		1		0		0		1
-			 ordervector	=	1	1	1	1	1	1	2	2	2	3	3	4	5 */
-
-class SharedListVector : public DataVector {
-	
-public:
-	SharedListVector();
-	SharedListVector(int);
-	SharedListVector(ifstream&);
-	SharedListVector(const SharedListVector& lv) : DataVector(lv.label), data(lv.data), maxRank(lv.maxRank), numBins(lv.numBins), numSeqs(lv.numSeqs){ groupmap = NULL; };
-	~SharedListVector(){ if (groupmap != NULL) { delete groupmap; } };
-	
-	int getNumBins()							{	return numBins;		}
-	int getNumSeqs()							{	return numSeqs;		}
-	int getMaxRank()							{	return maxRank;		}
-
-	void set(int, string);	
-	string get(int);
-	void push_back(string);
-	void resize(int);
-	void clear();
-	int size();
-	void print(ostream&);
-	
-	RAbundVector getRAbundVector();
-	SAbundVector getSAbundVector();
-	OrderVector getOrderVector(map<string,int>*);
-	SharedOrderVector* getSharedOrderVector();
-	SharedRAbundVector getSharedRAbundVector(string);  //get sharedrabundvector for a certain group
-	SharedSAbundVector getSharedSAbundVector(string);			//get sharedsabundvector for a certain group
-	vector<SharedRAbundVector*> getSharedRAbundVector(); //returns sharedRabundVectors for all the users groups
-	
-private:
-	vector<string> data;  //data[i] is a list of names of sequences in the ith OTU.
-	GroupMap* groupmap;
-	int maxRank;
-	int numBins;
-	int numSeqs;
-
-};
-
-#endif