X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sharedkstest.cpp;fp=sharedkstest.cpp;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=d91478801678c53ddb87dce7b1474272a2b30275;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/sharedkstest.cpp b/sharedkstest.cpp
deleted file mode 100644
index d914788..0000000
--- a/sharedkstest.cpp
+++ /dev/null
@@ -1,64 +0,0 @@
-/*
- *  kstest.cpp
- *  Mothur
- *
- *  Created by Thomas Ryabin on 3/6/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "sharedkstest.h"
-
-/***********************************************************************/
-
-EstOutput KSTest::getValues(vector<SharedRAbundVector*> shared){
-	try {
-		data.resize(3,0);
-
-		//Must return shared1 and shared2 to original order at conclusion of kstest
-		vector <individual> initData1 = shared[0]->getData();
-		vector <individual> initData2 = shared[1]->getData();
-		shared[0]->sortD();
-		shared[1]->sortD();
-
-		int numNZ1 = shared[0]->numNZ();
-		int numNZ2 = shared[1]->numNZ();
-		double numInd1 = (double)shared[0]->getNumSeqs();
-		double numInd2 = (double)shared[1]->getNumSeqs();
-		
-		double maxDiff = -1;
-		double sum1 = 0;
-		double sum2 = 0;
-		for(int i = 1; i < shared[0]->getNumBins(); i++)
-		{
-			sum1 += shared[0]->get(i).abundance;
-			sum2 += shared[1]->get(i).abundance;
-			double diff = fabs((double)sum1/numInd1 - (double)sum2/numInd2);
-			if(diff > maxDiff)
-				maxDiff = diff;
-		}
-		
-		double DStatistic = maxDiff*numNZ1*numNZ2;
-		double a = pow((double)(numNZ1 + numNZ2)/(numNZ1*numNZ2),.5);
-		//double pVal = exp(-2*pow(maxDiff/a,2));
-		double critVal = 1.36*a*numNZ1*numNZ2;
-		
-		shared[0]->setData(initData1);
-		shared[1]->setData(initData2);
-		
-		data[0] = DStatistic;
-		data[1] = critVal;
-		data[2] = 0;
-		
-		if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
-		if (isnan(data[1]) || isinf(data[1])) { data[1] = 0; }
-
-		return data;
-	}
-	catch(exception& e) {
-		m->errorOut(e, "KSTest", "getValues");
-		exit(1);
-	}
-}
-
-/***********************************************************************/