X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sharedjackknife.cpp;fp=sharedjackknife.cpp;h=012d2067ab94e7026a9673e77287c1629beafc8d;hb=510b1cfc25cd79391d6973ca20c5ec25fb1bb3b2;hp=c1e5ff4ec4c56a1f5eddad239a9b21f6e0deb72c;hpb=37e0d78135e32b5aa58ca163f4d416716c78b67f;p=mothur.git

diff --git a/sharedjackknife.cpp b/sharedjackknife.cpp
index c1e5ff4..012d206 100644
--- a/sharedjackknife.cpp
+++ b/sharedjackknife.cpp
@@ -116,17 +116,11 @@ EstOutput SharedJackknife::getValues(vector<SharedRAbundVector*> vectorShared){
 			data[0] = rdata[0];
 			data[1] = rdata[1];
 			data[2] = rdata[2];
-			
-			//cout << "sT = " << data[0] << "    lower confLimit = " << data[1] << "     upper confLimit = " << data[2] << "\n";
+		
 			if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
 			if (isnan(data[1]) || isinf(data[1])) { data[1] = 0; }
 			if (isnan(data[2]) || isinf(data[0])) { data[2] = 0; }
 			
-			/*for(int i = 0; i < groups.size(); i++)
-				cout << groups.at(i)->getGroup() << " ";
-			cout << "\n";
-			cout << groups.size() << "     " << data[0] << "    " << data[1] << "     " << data[2] << "\n\n";*/
-			
 			return data;
 		}
 		
@@ -142,13 +136,9 @@ EstOutput SharedJackknife::getValues(vector<SharedRAbundVector*> vectorShared){
 	}
 		
 	catch(exception& e) {
-		cout << "Standard Error: " << e.what() << " has occurred in the SharedJackknife class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+		errorOut(e, "SharedJackknife", "getValues");
 		exit(1);
 	}
-	catch(...) {
-		cout << "An unknown error has occurred in the SharedJackknife class function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-		exit(1);
-	}	
 }
 
 /***********************************************************************/