X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sharedcommand.h;h=e5be50a8b9f80488449db640e65721d32f395a5d;hb=753dc84cf289b1d5dc0ca5b0c043640927aa951a;hp=b3b3e6f5d0381d2354d8113012b13251cdbec7e7;hpb=58cf1d08fee8c64334979075fa57bcafb035a2ed;p=mothur.git

diff --git a/sharedcommand.h b/sharedcommand.h
index b3b3e6f..e5be50a 100644
--- a/sharedcommand.h
+++ b/sharedcommand.h
@@ -9,14 +9,11 @@
  *
  */
 
-#include <iostream>
-#include <fstream>
-#include <map>
 #include "command.hpp"
 #include "sharedlistvector.h"
 #include "inputdata.h"
 #include "shared.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
 
 /* The shared() command:
 	The shared command can only be executed after a successful read.shared command.  
@@ -33,15 +30,17 @@ public:
 	SharedCommand();	
 	~SharedCommand();
 	int execute();	
+	void help() {}
 	
 private:
 	void printSharedData();
 	GlobalData* globaldata;
-	ReadMatrix* read;
+	ReadOTUFile* read;
 	SharedListVector* SharedList;
 	InputData* input;
 	Shared* shared;
 	map<string, SharedRAbundVector*>::iterator it;
+	//vector<SharedRAbundVector*> lookup;
 	ofstream out;
 	string filename;