X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sharedcommand.cpp;h=91bb8e19604d3d9446016c4b9eaf82f566172c0a;hb=762b3e4c83e1e8e8392c1199b6482d36ee89e50f;hp=213fd49588bbf8a9278bc04c14d474bd11ccb278;hpb=1dc7ed939c314b3057dad3a834e9739fb7ecfbe6;p=mothur.git

diff --git a/sharedcommand.cpp b/sharedcommand.cpp
index 213fd49..91bb8e1 100644
--- a/sharedcommand.cpp
+++ b/sharedcommand.cpp
@@ -8,7 +8,11 @@
  */
 
 #include "sharedcommand.h"
-
+//********************************************************************************************************************
+//sorts lowest to highest
+inline bool compareSharedRabunds(SharedRAbundVector* left, SharedRAbundVector* right){
+	return (left->getGroup() < right->getGroup());	
+} 
 //**********************************************************************************************************************
 
 SharedCommand::SharedCommand(string o) : outputDir(o) {
@@ -143,6 +147,7 @@ int SharedCommand::execute(){
 			if(globaldata->allLines == 1 || globaldata->labels.count(SharedList->getLabel()) == 1){
 					
 					lookup = SharedList->getSharedRAbundVector();
+					
 					m->mothurOut(lookup[0]->getLabel()); m->mothurOutEndLine();
 					if (pickedGroups) { //check for otus with no seqs in them
 						eliminateZeroOTUS(lookup);
@@ -275,6 +280,8 @@ int SharedCommand::execute(){
 void SharedCommand::printSharedData(vector<SharedRAbundVector*> thislookup) {
 	try {
 		
+		sort(thislookup.begin(), thislookup.end(), compareSharedRabunds);
+		
 		//initialize bin values
 		for (int i = 0; i < thislookup.size(); i++) {
 //cout << "in printData " << thislookup[i]->getLabel() << '\t' << thislookup[i]->getGroup() <<  endl;