X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=shared.h;h=515c2a0da33ab4b2bfc63c25c409ba37fd2ecd49;hb=b7cce6e0a45013919e76a266533fcca4052cf157;hp=42c9d65d5e8071ec1ba0ba6d7333487150974b18;hpb=20a2d0350a737a434c89f303662d64a8eeea7b05;p=mothur.git

diff --git a/shared.h b/shared.h
index 42c9d65..515c2a0 100644
--- a/shared.h
+++ b/shared.h
@@ -9,31 +9,24 @@
  *  Copyright 2008 Schloss Lab UMASS Amherst. All rights reserved.
  *
  */
- 
-using namespace std;
 
-#include <Carbon/Carbon.h>
-#include <iostream>
-#include <fstream>
-#include <iomanip>
-#include <vector>
-#include <string>
-#include <sstream>
-#include <map>
+#include "mothur.h"
 #include "sharedrabundvector.h"
-#include "listvector.hpp"
+#include "sharedlistvector.h"
+#include "globaldata.hpp"
 
 class Shared {
 	public:
 		Shared();
-		~Shared();
-		void getSharedVectors(int, ListVector*);
+		~Shared() {};
+		void getSharedVectors(SharedListVector*);
 		map<string, SharedRAbundVector*> sharedGroups; //string is groupname, SharedVector* is out info for that group
 		
 	private:
 		GlobalData* globaldata;
-		void parse(int, ListVector*);
-		vector< map<string, SharedRAbundVector*> > sharedRAbund;  //contains all the info needed to create the .shared file not sure if we will need 
+		map<string, SharedRAbundVector*>::iterator it;
+		void parse(int, SharedListVector*);
+		//vector< map<string, SharedRAbundVector*> > sharedRAbund;  //contains all the info needed to create the .shared file not sure if we will need 
 };
 
-#endif
\ No newline at end of file
+#endif