X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sffmultiplecommand.cpp;h=b6894b48fd1371cb1b963e5a0e1714dc6cdf24b8;hb=70491a12902e89b85cfa6b44a7b7fbe066ee2ac1;hp=91d8b0152bf1db087f8243fc80e8c39b8dac57b9;hpb=deba0af0ccdcb6005ed5b2b82649b137c63fbdf7;p=mothur.git

diff --git a/sffmultiplecommand.cpp b/sffmultiplecommand.cpp
index 91d8b01..b6894b4 100644
--- a/sffmultiplecommand.cpp
+++ b/sffmultiplecommand.cpp
@@ -435,7 +435,7 @@ int SffMultipleCommand::readFile(vector<string>& sffFiles, vector<string>& oligo
                 // get rest of line in case there is a oligos filename
                 while (!in.eof())	{	
                     char c = in.get(); 
-                    if (c == 10 || c == 13){	break;	}
+                    if (c == 10 || c == 13 || c == -1){	break;	}
                     else if (c == 32 || c == 9){;} //space or tab
                     else { 	oligos += c;  }
                 }