X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sffinfocommand.h;h=837435b3a6ca4c4c7f2e7e7579141b8fbece342b;hb=d205e70ae86dbee2efc2df02f2717975854de6ba;hp=f18a3f5568167c031adabd5607cf2c07c2f651f9;hpb=a44542a3c740cf957cff72ac71742f2fe48b0eaf;p=mothur.git

diff --git a/sffinfocommand.h b/sffinfocommand.h
index f18a3f5..837435b 100644
--- a/sffinfocommand.h
+++ b/sffinfocommand.h
@@ -17,7 +17,7 @@
 struct CommonHeader {
 	unsigned int magicNumber;
 	string version;
-	unsigned long int indexOffset;
+	unsigned long long indexOffset;
 	unsigned int indexLength;
 	unsigned int numReads;
 	unsigned short headerLength;
@@ -82,7 +82,7 @@ private:
 	bool abort, fasta, qual, trim, flow, sfftxt, hasAccnos;
 	int mycount;
 	set<string> seqNames;
-	
+    
 	//extract sff file functions
 	int extractSffInfo(string, string);
 	int readCommonHeader(ifstream&, CommonHeader&);
@@ -98,7 +98,8 @@ private:
 	int printQualSeqData(ofstream&, seqRead&, Header&);
 	int readAccnosFile(string);
 	int parseSffTxt();
-	
+	bool sanityCheck(Header&, seqRead&);
+    
 	//parsesfftxt file functions
 	int parseHeaderLineToInt(ifstream&);
 	vector<unsigned short> parseHeaderLineToFloatVector(ifstream&, int);