X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sffinfocommand.h;h=5ec6e72239d0772548ce10f584ebccb435230d25;hb=3914b0d6480f67df53b1e838f51c4e6155710434;hp=dd3c57fa747646a94d26cebd9420fbbf4525f3f6;hpb=b866e1519a60681527244036428104ad1cb90c93;p=mothur.git

diff --git a/sffinfocommand.h b/sffinfocommand.h
index dd3c57f..5ec6e72 100644
--- a/sffinfocommand.h
+++ b/sffinfocommand.h
@@ -69,8 +69,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "sffinfo";					}
 	string getCommandCategory()		{ return "Sequence Processing";		}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Sffinfo"; }
 	string getDescription()		{ return "extract sequences reads from a .sff file"; }
 
@@ -84,7 +85,6 @@ private:
 	int mycount, split, numFPrimers, numLinkers, numSpacers, pdiffs, bdiffs, ldiffs, sdiffs, tdiffs;
 	set<string> seqNames;
     map<string, int> barcodes;
-    map<string, int> rbarcodes;
     map<string, int> primers;
     vector<string> linker, spacer, primerNameVector, barcodeNameVector, revPrimer;
     vector<vector<int> > numSplitReads;