X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sffinfocommand.h;fp=sffinfocommand.h;h=837435b3a6ca4c4c7f2e7e7579141b8fbece342b;hb=43ed0accfbc2852849e104ff7eccdd2c42acd4ec;hp=903a589cd777b89b7e508e48d1173d550210f864;hpb=5d77fd07180d1fb8561ff1962e6d7429caf8555e;p=mothur.git

diff --git a/sffinfocommand.h b/sffinfocommand.h
index 903a589..837435b 100644
--- a/sffinfocommand.h
+++ b/sffinfocommand.h
@@ -82,7 +82,7 @@ private:
 	bool abort, fasta, qual, trim, flow, sfftxt, hasAccnos;
 	int mycount;
 	set<string> seqNames;
-	
+    
 	//extract sff file functions
 	int extractSffInfo(string, string);
 	int readCommonHeader(ifstream&, CommonHeader&);
@@ -98,7 +98,8 @@ private:
 	int printQualSeqData(ofstream&, seqRead&, Header&);
 	int readAccnosFile(string);
 	int parseSffTxt();
-	
+	bool sanityCheck(Header&, seqRead&);
+    
 	//parsesfftxt file functions
 	int parseHeaderLineToInt(ifstream&);
 	vector<unsigned short> parseHeaderLineToFloatVector(ifstream&, int);