X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sffinfocommand.h;fp=sffinfocommand.h;h=7cf357e07499ad5797dec8bbc1e647c163993aa8;hb=8bc3e5b38c2317a1715f53be22fa96455868c281;hp=939a1c70bf87ee50c97aa95bc387599cf0b866f5;hpb=f663afa231c9bc1b5e18e0ea3bdd2b2ee784f5b2;p=mothur.git

diff --git a/sffinfocommand.h b/sffinfocommand.h
index 939a1c7..7cf357e 100644
--- a/sffinfocommand.h
+++ b/sffinfocommand.h
@@ -60,7 +60,12 @@ class SffInfoCommand : public Command {
 	
 public:
 	SffInfoCommand(string);
+	SffInfoCommand();
 	~SffInfoCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
@@ -69,6 +74,7 @@ private:
 	vector<string> filenames, outputNames, accnosFileNames;
 	bool abort, fasta, qual, trim, flow, sfftxt, hasAccnos;
 	set<string> seqNames;
+	map<string, vector<string> > outputTypes;
 	
 	int extractSffInfo(string, string);
 	int readCommonHeader(ifstream&, CommonHeader&);