X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=setlogfilecommand.cpp;h=329fd1fdbeb28ba673c883eeb6ea36fe059c64fc;hb=6b32d112bb60e9f7eb6d4407a4eed4c49b67bced;hp=128c5671ed55712d2293e0b3c3959da17a7e9f05;hpb=deba0af0ccdcb6005ed5b2b82649b137c63fbdf7;p=mothur.git

diff --git a/setlogfilecommand.cpp b/setlogfilecommand.cpp
index 128c567..329fd1f 100644
--- a/setlogfilecommand.cpp
+++ b/setlogfilecommand.cpp
@@ -85,9 +85,14 @@ int SetLogFileCommand::execute(){
 		
 		if (abort == true) { if (calledHelp) { return 0; }  return 2;	}
 		
-		commandFactory = CommandFactory::getInstance();
-		
-		commandFactory->setLogfileName(name, append);
+        commandFactory = CommandFactory::getInstance();
+        
+        string directory = m->hasPath(name);
+        if (directory == "") {
+            commandFactory->setLogfileName(name, append);
+        }else if (m->dirCheck(directory)) {
+            commandFactory->setLogfileName(name, append);
+        }
 		
 		return 0;
 	}