X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=setdircommand.h;h=9afc4ea6579d68019dfe04c56aab7119b78d656a;hb=ee8403d4eb5760187d62b42a9cf4272de8fc0ec4;hp=625c83b63d40c6674490fe00b510cd2780449d08;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/setdircommand.h b/setdircommand.h
index 625c83b..9afc4ea 100644
--- a/setdircommand.h
+++ b/setdircommand.h
@@ -27,14 +27,15 @@ public:
 	string getCommandCategory()		{ return "General";		}
 	string getHelpString();	
 	string getCitation() { return "http://www.mothur.org/wiki/Set.dir"; }
-	
+	string getDescription()		{ return "set input, output and default directories"; }
+
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
 	
 private:
 	CommandFactory* commandFactory;
 	string output, input, tempdefault;
-	bool abort;
+	bool abort, debugOnly;
 	vector<string> outputNames;