X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=setdircommand.h;fp=setdircommand.h;h=b3b00c46c65b65f1c7f243221ceb4e814a37dbc5;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git

diff --git a/setdircommand.h b/setdircommand.h
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+++ b/setdircommand.h
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+#ifndef SETDIRCOMMAND_H
+#define SETDIRCOMMAND_H
+
+/*
+ *  setoutdircommand.h
+ *  Mothur
+ *
+ *  Created by westcott on 1/21/10.
+ *  Copyright 2010 Schloss Lab. All rights reserved.
+ *
+ */
+
+#include "command.hpp"
+#include "commandfactory.hpp"
+
+/**********************************************************/
+
+class SetDirectoryCommand : public Command {
+	
+public:
+	SetDirectoryCommand(string);
+	SetDirectoryCommand() { abort = true; calledHelp = true; setParameters(); }
+	~SetDirectoryCommand(){}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "set.dir";		}
+	string getCommandCategory()		{ return "General";		}
+	string getHelpString();	
+	string getCitation() { return "http://www.mothur.org/wiki/Set.dir"; }
+	string getDescription()		{ return "set input, output and default directories"; }
+
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
+	
+private:
+	CommandFactory* commandFactory;
+	string output, input, tempdefault;
+	bool abort;
+	vector<string> outputNames;
+	
+		
+};
+
+/**********************************************************/
+ 
+#endif
+