X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=setdircommand.cpp;h=4536d9516688fe6db1d9c10e709e789c40abe93c;hb=1a968f34ae2d2680eaf189a197d1a21b8dfd6c03;hp=ca8c62d43821652d6bf4ea868e9444d54c256ff4;hpb=4522aebe2246c5f47875d5c8cc505f1b615bfc7e;p=mothur.git

diff --git a/setdircommand.cpp b/setdircommand.cpp
index ca8c62d..4536d95 100644
--- a/setdircommand.cpp
+++ b/setdircommand.cpp
@@ -12,12 +12,12 @@
 //**********************************************************************************************************************
 vector<string> SetDirectoryCommand::setParameters(){	
 	try {
-		CommandParameter ptempdefault("tempdefault", "String", "", "", "", "", "",false,false); parameters.push_back(ptempdefault);
-        CommandParameter pdebug("debug", "Boolean", "", "F", "", "", "",false,false); parameters.push_back(pdebug);
-		CommandParameter pinput("input", "String", "", "", "", "", "",false,false); parameters.push_back(pinput);
-		CommandParameter poutput("output", "String", "", "", "", "", "",false,false); parameters.push_back(poutput);
-		CommandParameter pinputdir("inputdir", "String", "", "", "", "", "",false,false); parameters.push_back(pinputdir);
-		CommandParameter poutputdir("outputdir", "String", "", "", "", "", "",false,false); parameters.push_back(poutputdir);
+		CommandParameter ptempdefault("tempdefault", "String", "", "", "", "", "","",false,false); parameters.push_back(ptempdefault);
+        CommandParameter pdebug("debug", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(pdebug);
+		CommandParameter pinput("input", "String", "", "", "", "", "","",false,false,true); parameters.push_back(pinput);
+		CommandParameter poutput("output", "String", "", "", "", "", "","",false,false,true); parameters.push_back(poutput);
+		CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir);
+		CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir);
 		
 		vector<string> myArray;
 		for (int i = 0; i < parameters.size(); i++) {	myArray.push_back(parameters[i].name);		}