X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=setcurrentcommand.h;h=effc266fc0dfaccd13d5d1e1fdbe6c348d4428d6;hb=1a968f34ae2d2680eaf189a197d1a21b8dfd6c03;hp=3949519e9ec3f04392d555539fd5409dcab59dea;hpb=d2390ede25cc211f95f99e377d5654bad7e6950e;p=mothur.git

diff --git a/setcurrentcommand.h b/setcurrentcommand.h
index 3949519..effc266 100644
--- a/setcurrentcommand.h
+++ b/setcurrentcommand.h
@@ -23,7 +23,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "set.current";	}
 	string getCommandCategory()		{ return "General";		}
+	
 	string getHelpString();	
+    string getOutputPattern(string){ return ""; }	
 	string getCitation() { return "http://www.mothur.org/wiki/Set.current"; }
 	string getDescription()		{ return "set current files for mothur"; }
 
@@ -38,7 +40,7 @@ private:
 	string clearTypes;
 	vector<string> types;
 	
-	string accnosfile, phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, designfile, taxonomyfile, biomfile;
+	string accnosfile, phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, designfile, taxonomyfile, biomfile, countfile, summaryfile;
 	string orderfile, treefile, sharedfile, ordergroupfile, relabundfile, fastafile, qualfile, sfffile, oligosfile, processors, flowfile;