X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sequencedb.h;h=367254949fa6a2a43a59589db159810a82499dc7;hb=9946a1b4b50969d08ce059b248bdeecafbf989ac;hp=88b31e2e5d7adc050c58e3d18cb7ffca7652370b;hpb=faf4e99552d6fb4595ff348b1f909ddc74536da2;p=mothur.git

diff --git a/sequencedb.h b/sequencedb.h
index 88b31e2..3672549 100644
--- a/sequencedb.h
+++ b/sequencedb.h
@@ -30,18 +30,19 @@ public:
 	int getNumSeqs();
 	
 	void set(int, string);     //unaligned - should also set length
-	void set(int, Sequence*);   //unaligned - should also set length
-	Sequence* get(int);         //returns sequence name at that location
-	void push_back(Sequence*);        //adds unaligned sequence
+	void set(int, Sequence);   //unaligned - should also set length
+	Sequence get(int);         //returns sequence name at that location
+	void push_back(Sequence);        //adds unaligned sequence
 	void resize(int);      //resizes data
 	void clear();              //clears data - remeber to loop through and delete the sequences inside or you will have a memory leak
 	int size();                //returns datas size
 	void print(ostream&);      //loops through data using sequence class print
 		
 private:
-	vector<Sequence*> data;
+	vector<Sequence> data;
 	string readName(ifstream&);
 	string readSequence(ifstream&);
+	MothurOut* m;
 
 };