X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sequence.hpp;h=c49899411f2dd7919d96ce9b9840c30b2b0dfcac;hb=a38cc7240f45bd39aa60d0df75825c17af0a082c;hp=312e49dcce47e7373b782a110030b46a9617be0a;hpb=4b54ce99af7db8019ea907cd7c2edf789369ada9;p=mothur.git

diff --git a/sequence.hpp b/sequence.hpp
index 312e49d..c498994 100644
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -48,6 +48,7 @@ public:
 	string getPairwise();
 	string getUnaligned();
 	string getInlineSeq();
+    int getNumNs();
 	int getNumBases();
 	int getStartPos();
 	int getEndPos();
@@ -75,6 +76,7 @@ private:
 	string unaligned;
 	string aligned;
 	string pairwise;
+    string comment;
 	int numBases;
 	int alignmentLength;
 	bool isAligned;