X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sequence.hpp;h=ad3a4b40c238c4260d36f7afea027b903539c8a0;hb=541bab1dac00688b4c3a8c4a95ab464412663c50;hp=db4c4f32b9992a27f63e15908d881a77d5507980;hpb=91a27e0483827c06c21c4fe89558923bbfe86573;p=mothur.git

diff --git a/sequence.hpp b/sequence.hpp
index db4c4f3..ad3a4b4 100644
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -48,6 +48,7 @@ public:
 	string getPairwise();
 	string getUnaligned();
 	string getInlineSeq();
+    int getNumNs();
 	int getNumBases();
 	int getStartPos();
 	int getEndPos();
@@ -69,6 +70,8 @@ private:
 	string getCommentString(ifstream&);
 	string getSequenceString(istringstream&, int&);
 	string getCommentString(istringstream&);
+    string getSequenceName(ifstream&);
+    string getSequenceName(istringstream&);
 	string name;
 	string unaligned;
 	string aligned;