X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sequence.hpp;h=95c3e51839029393798dc2f57848d5e325c6c2df;hb=b447f829850ae054e42560c7c3ed71b14f3f40bb;hp=21b4c3874c9ccb1f5ab9eab31fe78fbd7f0a40c6;hpb=0319c36f068f092c766e1bff34b3554c1858255a;p=mothur.git

diff --git a/sequence.hpp b/sequence.hpp
index 21b4c38..95c3e51 100644
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -26,6 +26,11 @@ public:
 	Sequence(ifstream&);
 	Sequence(istringstream&);
 	
+	//these constructors just set the unaligned string to save space
+	Sequence(string, string, string);  
+	Sequence(ifstream&, string);
+	Sequence(istringstream&, string);
+	
 	void setName(string);
 	void setUnaligned(string);
 	void setPairwise(string);
@@ -47,9 +52,6 @@ public:
 	bool getIsAligned();
 	void printSequence(ostream&);
 	
-	int MPISend(int); //not working at the moment...
-	int MPIRecv(int); //not working at the moment...
-	
 private:
 	MothurOut* m;
 	void initialize();