X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sequence.hpp;h=94d7d29b6117da80862e9fc8b3d0855c4adb8edd;hb=0bcfddf7bc721a334bdae42d86a580019303537d;hp=48287af367092715ab999b9ffabf02229c68cacc;hpb=c67cf4168e1a124088b6f017946f0aa1fbdf1301;p=mothur.git

diff --git a/sequence.hpp b/sequence.hpp
index 48287af..94d7d29 100644
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -44,9 +44,12 @@ public:
 	string getAligned();
 	string getPairwise();
 	string getUnaligned();
+	string getInlineSeq();
 	int getNumBases();
 	int getStartPos();
 	int getEndPos();
+	void padToPos(int);
+	void padFromPos(int);
 	int getAlignLength();
 	int getAmbigBases();
 	void removeAmbigBases();