X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sequence.hpp;fp=sequence.hpp;h=6a50cb0b8aa31e4a3a3b6c9c97e77416f53eeeb1;hb=3094cb29c613d9687e861e1d0cf9104b7141d24e;hp=224ae5d7a7452172c3aa3be1e63906e0a876efe2;hpb=e0dc0bcef2a0f7e1f63abb531dbb1ad533da98ca;p=mothur.git

diff --git a/sequence.hpp b/sequence.hpp
index 224ae5d..6a50cb0 100644
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -65,9 +65,9 @@ public:
 private:
 	MothurOut* m;
 	void initialize();
-	string getSequenceString(ifstream&);
+	string getSequenceString(ifstream&, int&);
 	string getCommentString(ifstream&);
-	string getSequenceString(istringstream&);
+	string getSequenceString(istringstream&, int&);
 	string getCommentString(istringstream&);
 	string name;
 	string unaligned;