X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sequence.hpp;fp=sequence.hpp;h=0a62e0c1ff6b60f20d58ed260847fb39eec44659;hb=a33a385cc5b7481488f92f794425f01fbf40a543;hp=af0cba814baece3ae9ce4abae02b3fa7370769cf;hpb=36cea83f926066127bf856e7eae1a70ce7e796d0;p=mothur.git

diff --git a/sequence.hpp b/sequence.hpp
index af0cba8..0a62e0c 100644
--- a/sequence.hpp
+++ b/sequence.hpp
@@ -52,6 +52,8 @@ public:
 	int getEndPos();
 	void padToPos(int);
 	void padFromPos(int);
+    int filterToPos(int); //any character before the pos is changed to . and aligned and unaligned strings changed
+    int filterFromPos(int); //any character after the pos is changed to . and aligned and unaligned strings changed
 	int getAlignLength();
 	int getAmbigBases();
 	void removeAmbigBases();