X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sequence.cpp;h=4c631a23451d4d9723aec3a29bed423737b243ba;hb=75cff1a83a64cd46e9dd603e02597a2bb6a76119;hp=224ecb10cb1529db7d6bdb10c268be047dae5834;hpb=e9845ee4c8db2e044e87d721cc2d94f8d609e03d;p=mothur.git

diff --git a/sequence.cpp b/sequence.cpp
index 224ecb1..4c631a2 100644
--- a/sequence.cpp
+++ b/sequence.cpp
@@ -772,6 +772,8 @@ void Sequence::trim(int length){
 	if(numBases > length){
 		unaligned = unaligned.substr(0,length);
 		numBases = length;
+        aligned = "";
+        isAligned = 0;
 	}
 	
 }