X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=seqsummarycommand.cpp;h=e941b3a9a2ff500dd07e221712757a8b899526d2;hb=6b32d112bb60e9f7eb6d4407a4eed4c49b67bced;hp=e6b037b6bcafafa6c7ccf5aafa9731de3d7ba864;hpb=cd1a91833339b19a107ce769ee67b5fc74c93ce4;p=mothur.git

diff --git a/seqsummarycommand.cpp b/seqsummarycommand.cpp
index e6b037b..e941b3a 100644
--- a/seqsummarycommand.cpp
+++ b/seqsummarycommand.cpp
@@ -203,7 +203,7 @@ int SeqSummaryCommand::execute(){
 		if (namefile != "") { nameMap = m->readNames(namefile); }
         else if (countfile != "") {
             CountTable ct;
-            ct.readTable(countfile, false);
+            ct.readTable(countfile, false, false);
             nameMap = ct.getNameMap();
         }
 		
@@ -376,7 +376,7 @@ int SeqSummaryCommand::execute(){
                 
         double meanstartPosition, meanendPosition, meanseqLength, meanambigBases, meanlongHomoPolymer;
                 
-		meanstartPosition /= (double) size; meanendPosition /= (double) size; meanlongHomoPolymer /= (double) size; meanseqLength /= (double) size; meanambigBases /= (double) size;
+		meanstartPosition = meanStartPosition / (double) size; meanendPosition = meanEndPosition /(double) size; meanlongHomoPolymer = meanLongHomoPolymer / (double) size; meanseqLength = meanSeqLength / (double) size; meanambigBases = meanAmbigBases /(double) size;
 				
 		int ptile0_25	= int(size * 0.025);
 		int ptile25		= int(size * 0.250);