X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=seqerrorcommand.h;h=e8ca96a6328ee56cf56ff1e9a1869107b359896f;hb=bdb5d82e2a73829b4e1fa42656ad9bcb57e3e948;hp=a012d68e614e82c18a59fe79c115e213a614d35b;hpb=fe5bbb79f9434df947347881c47b430112f4253e;p=mothur.git

diff --git a/seqerrorcommand.h b/seqerrorcommand.h
index a012d68..e8ca96a 100644
--- a/seqerrorcommand.h
+++ b/seqerrorcommand.h
@@ -68,6 +68,8 @@ private:
 	map<string, vector<string> > outputTypes;
 	
 	vector<Sequence> referenceSeqs;
+	vector<vector<int> > substitutionMatrix;
+	int a,t,g,c,gap,n;
 };
 
 #endif