X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=seqerrorcommand.cpp;h=d06a5addf90f74334224a4220e64ea4f0320dedf;hb=fc3a1319b64fd3638df074e4669a1fb0235d1b8d;hp=2bb0e57566e59b39a04ce4b4968086894bf64355;hpb=9c37bed33eaa0bb2d3c499085c0e165c0f00886b;p=mothur.git

diff --git a/seqerrorcommand.cpp b/seqerrorcommand.cpp
index 2bb0e57..d06a5ad 100644
--- a/seqerrorcommand.cpp
+++ b/seqerrorcommand.cpp
@@ -22,6 +22,7 @@ vector<string> SeqErrorCommand::setParameters(){
 		CommandParameter pname("name", "InputTypes", "", "", "none", "none", "none",false,false); parameters.push_back(pname);
 		CommandParameter pignorechimeras("ignorechimeras", "Boolean", "", "T", "", "", "",false,false); parameters.push_back(pignorechimeras);
 		CommandParameter pthreshold("threshold", "Number", "", "1.0", "", "", "",false,false); parameters.push_back(pthreshold);
+		CommandParameter pprocessors("processors", "Number", "", "1", "", "", "",false,false); parameters.push_back(pprocessors);
 		CommandParameter pinputdir("inputdir", "String", "", "", "", "", "",false,false); parameters.push_back(pinputdir);
 		CommandParameter poutputdir("outputdir", "String", "", "", "", "", "",false,false); parameters.push_back(poutputdir);
 		
@@ -200,6 +201,10 @@ SeqErrorCommand::SeqErrorCommand(string option)  {
 			
 			temp = validParameter.validFile(parameters, "ignorechimeras", false);	if (temp == "not found") { temp = "1"; }
 			convert(temp, ignoreChimeras);  
+			
+			temp = validParameter.validFile(parameters, "processors", false);	if (temp == "not found"){	temp = m->getProcessors();	}
+			m->setProcessors(temp);
+			convert(temp, processors); 
 
 			substitutionMatrix.resize(6);
 			for(int i=0;i<6;i++){	substitutionMatrix[i].resize(6,0);	}