X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=seqerrorcommand.cpp;h=641a3abce04bde1b8002e11af636fcd5e58bc6e2;hb=2a29fceeeb8754c3fd97ba830d2fbed5c4349ee8;hp=0a6eae93df72e8556554bef32c5a52074a4d0a54;hpb=567e4bca5d62bd8ea316ce5def320d070d7507b8;p=mothur.git

diff --git a/seqerrorcommand.cpp b/seqerrorcommand.cpp
index 0a6eae9..641a3ab 100644
--- a/seqerrorcommand.cpp
+++ b/seqerrorcommand.cpp
@@ -407,6 +407,13 @@ int SeqErrorCommand::execute(){
 		m->mothurOut("It took " + toString(time(NULL) - start) + " secs to check " + toString(numSeqs) + " sequences.");
 		m->mothurOutEndLine();
 		
+        //set fasta file as new current fastafile
+		string current = "";
+		itTypes = outputTypes.find("errorseq");
+		if (itTypes != outputTypes.end()) {
+			if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setFastaFile(current); }
+		}
+        
 		m->mothurOutEndLine();
 		m->mothurOut("Output File Names: "); m->mothurOutEndLine();
 		for (int i = 0; i < outputNames.size(); i++) { m->mothurOut(outputNames[i]); m->mothurOutEndLine(); }