X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=seqerrorcommand.cpp;h=4e5abc95b7189bd8d5178fae77c00ac17117311d;hb=HEAD;hp=d196db85e3da3fabf72307f47ac58996833b6457;hpb=60928795782d8f8648ec373d6a96b53032a77429;p=mothur.git

diff --git a/seqerrorcommand.cpp b/seqerrorcommand.cpp
index d196db8..4e5abc9 100644
--- a/seqerrorcommand.cpp
+++ b/seqerrorcommand.cpp
@@ -430,13 +430,6 @@ int SeqErrorCommand::execute(){
 		m->mothurOut("It took " + toString(time(NULL) - start) + " secs to check " + toString(numSeqs) + " sequences.");
 		m->mothurOutEndLine();
 		
-        //set fasta file as new current fastafile
-		string current = "";
-		itTypes = outputTypes.find("errorseq");
-		if (itTypes != outputTypes.end()) {
-			if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setFastaFile(current); }
-		}
-        
 		m->mothurOutEndLine();
 		m->mothurOut("Output File Names: "); m->mothurOutEndLine();
 		for (int i = 0; i < outputNames.size(); i++) { m->mothurOut(outputNames[i]); m->mothurOutEndLine(); }
@@ -462,7 +455,7 @@ int SeqErrorCommand::createProcesses(string filename, string qFileName, string r
 		
 		//loop through and create all the processes you want
 		while (process != processors) {
-			int pid = fork();
+			pid_t pid = fork();
 			
 			if (pid > 0) {
 				processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later