X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sensspeccommand.h;h=bfa329131f341e6a0750a318cc237ead77bbd8a4;hb=372fb21ea66ced432b109225851a1b80ef0491a3;hp=73b74e3983a9b1e4078a5ee55e5ae975fd40f944;hpb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e;p=mothur.git

diff --git a/sensspeccommand.h b/sensspeccommand.h
index 73b74e3..bfa3291 100644
--- a/sensspeccommand.h
+++ b/sensspeccommand.h
@@ -48,7 +48,7 @@ private:
 	set<string> labels; //holds labels to be used
 
 	long int truePositives, falsePositives, trueNegatives, falseNegatives;
-	bool abort, allLines;
+	bool abort, allLines, square;
 	bool hard;
 	//string lineLabel;
 	double cutoff;
@@ -58,6 +58,8 @@ private:
 	int fillSeqPairSet(set<string>&, ListVector*&);
 	int process(map<string, int>&, string, bool&, string&);
 	int process(set<string>&, string, bool&, string&, int);
+    string preProcessList();
+    bool testFile();
 
 };