X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sensspeccommand.h;h=818667a1c52729a2610564334d13225472eaac39;hb=37309a2552995e5f7f2e04be99b808c803472311;hp=52ab31ea6c96c88edb1b9b360cac7f9e38979a4e;hpb=bc4c4d63e983a3e91e74b5038bfec6705e1a3a2e;p=mothur.git

diff --git a/sensspeccommand.h b/sensspeccommand.h
index 52ab31e..818667a 100644
--- a/sensspeccommand.h
+++ b/sensspeccommand.h
@@ -24,16 +24,20 @@ public:
 	
 private:
 	void processPhylip();
-///	void processColumn(map<string, int>);
+	void processColumn();
+	void setUpOutput();
+	void outputStatistics(string, string);
 	
-	string listFile, distFile, nameFile, outputDir;
+	string listFile, distFile, nameFile, sensSpecFileName;
+	string outputDir;
 	string format;
-//	int numSeqs, numDists;
-	int truePositives, falsePositives, trueNegatives, falseNegatives;
+
+	long int truePositives, falsePositives, trueNegatives, falseNegatives;
 	bool abort;
 	bool hard;
 	string lineLabel;
 	double cutoff;
+	int precision;
 };
 
 #endif
\ No newline at end of file