X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sensspeccommand.h;h=73b74e3983a9b1e4078a5ee55e5ae975fd40f944;hb=af9291809910b6ddf617490ed5c16254b77b449f;hp=a5072e80c4bd908ed63d0f1ab34c83a5285b2e95;hpb=f687723a8357916e86a05116978e6869b039ce36;p=mothur.git diff --git a/sensspeccommand.h b/sensspeccommand.h index a5072e8..73b74e3 100644 --- a/sensspeccommand.h +++ b/sensspeccommand.h @@ -26,9 +26,10 @@ public: vector setParameters(); string getCommandName() { return "sens.spec"; } string getCommandCategory() { return "OTU-Based Approaches"; } - string getOutputFileNameTag(string, string); + string getHelpString(); - string getCitation() { return "Schloss PD, Westcott SL (2011). Assessing and improving methods used in OTU-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol. \nhttp://www.mothur.org/wiki/Sens.spec"; } + string getOutputPattern(string); + string getCitation() { return "Schloss PD, Westcott SL (2011). Assessing and improving methods used in OTU-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol 77:3219.\nhttp://www.mothur.org/wiki/Sens.spec"; } string getDescription() { return "sens.spec"; } int execute();