X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=secondarystructurecommand.h;h=4e7bdea09cac0d1bd86d780eb92e499bbe9bfc69;hb=8dd3c225255d7084e3aff8740aa4f1f1cabb367a;hp=2e04936a8eea682d1f8511de11a16a601c9e9d1c;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git

diff --git a/secondarystructurecommand.h b/secondarystructurecommand.h
index 2e04936..4e7bdea 100644
--- a/secondarystructurecommand.h
+++ b/secondarystructurecommand.h
@@ -40,6 +40,9 @@ class AlignCheckCommand : public Command {
 		string getCommandName()			{ return "align.check";				}
 		string getCommandCategory()		{ return "Sequence Processing";		}
 		string getHelpString();	
+		string getCitation() { return "http://www.mothur.org/wiki/Align.check"; }
+		string getDescription()		{ return "calculate the number of potentially misaligned bases in a 16S rRNA gene sequence alignment"; }
+
 	
 		int execute(); 
 		void help() { m->mothurOut(getHelpString()); }