X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=secondarystructurecommand.h;h=2e6191ca67f47f92f38bb8c030a8ad3e32920af6;hb=44b464979e91c2a1f144ac45ca12c14fcf6579f0;hp=dffb4cbd980ff504307465ae64a0f6645fe5e6a5;hpb=315e38cf393c82be238da5b32574f225a020d25c;p=mothur.git

diff --git a/secondarystructurecommand.h b/secondarystructurecommand.h
index dffb4cb..2e6191c 100644
--- a/secondarystructurecommand.h
+++ b/secondarystructurecommand.h
@@ -41,7 +41,7 @@ class AlignCheckCommand : public Command {
 		vector<int> structMap;
 		string mapfile, fastafile, outputDir;
 		bool abort;
-		int seqLength;
+		int seqLength, haderror;
 		
 		void readMap();
 		statData getStats(string sequence);