X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=secondarystructurecommand.h;fp=secondarystructurecommand.h;h=2e6191ca67f47f92f38bb8c030a8ad3e32920af6;hb=f89b6501b7d80e705b6c50ff2c8bdd8bb5d2edf7;hp=dffb4cbd980ff504307465ae64a0f6645fe5e6a5;hpb=6777912b79eb6d011163da47f3ada09d1a9293c1;p=mothur.git

diff --git a/secondarystructurecommand.h b/secondarystructurecommand.h
index dffb4cb..2e6191c 100644
--- a/secondarystructurecommand.h
+++ b/secondarystructurecommand.h
@@ -41,7 +41,7 @@ class AlignCheckCommand : public Command {
 		vector<int> structMap;
 		string mapfile, fastafile, outputDir;
 		bool abort;
-		int seqLength;
+		int seqLength, haderror;
 		
 		void readMap();
 		statData getStats(string sequence);